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Publications

Genetic, sociodemographic, lifestyle, and clinical risk factors of recurrent coronary artery disease events: a population-based cohort study.

Cho SMJ, Koyama S, Honigberg MC, et al. Genetic, sociodemographic, lifestyle, and clinical risk factors of recurrent coronary artery disease events: a population-based cohort study. European heart journal. 2023. doi:10.1093/eurheartj/ehad380

Optimization-based decoding of Imaging Spatial Transcriptomics data.

Bryan JP, Binan L, McCann C, Eldar YC, Farhi SL, Cleary B. Optimization-based decoding of Imaging Spatial Transcriptomics data. Bioinformatics (Oxford, England). 2023;39(6). doi:10.1093/bioinformatics/btad362

Shining a Light on the Dark Proteome: Non-Canonical Open Reading Frames and their Encoded MiniProteins as a New Frontier in Cancer Biology.

Posner Z, Yannuzzi I, Prensner JR. Shining a Light on the Dark Proteome: Non-Canonical Open Reading Frames and their Encoded MiniProteins as a New Frontier in Cancer Biology. Protein science : a publication of the Protein Society. 2023:e4708. doi:10.1002/pro.4708

Positional influence on cellular transcriptional identity revealed through spatially segmented single-cell transcriptomics.

Morse DB, Michalowski AM, Ceribelli M, et al. Positional influence on cellular transcriptional identity revealed through spatially segmented single-cell transcriptomics. Cell systems. 2023;14(6):464-481.e7. doi:10.1016/j.cels.2023.05.003

BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences.

Valeri JA, Soenksen LR, Collins KM, et al. BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences. Cell systems. 2023;14(6):525-542.e9. doi:10.1016/j.cels.2023.05.007

Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution.

Fame RM, Kalugin PN, Petrova B, et al. Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution. Nature communications. 2023;14(1):3720. doi:10.1038/s41467-023-39326-3

Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.

Einson J, Glinos D, Boerwinkle E, et al. Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants. Genetics. 2023. doi:10.1093/genetics/iyad115

Social Determinants of Health and Cerebral Small Vessel Disease: Is Epigenetics a Key Mediator?

Parodi L, Mayerhofer E, Narasimhalu K, et al. Social Determinants of Health and Cerebral Small Vessel Disease: Is Epigenetics a Key Mediator? Journal of the American Heart Association. 2023:e029862. doi:10.1161/JAHA.123.029862

Metabolic Signatures of Cardiac Dysfunction, Multimorbidity, and Post-Transcatheter Aortic Valve Implantation Death.

Perry AS, Zhao S, Murthy V, et al. Metabolic Signatures of Cardiac Dysfunction, Multimorbidity, and Post-Transcatheter Aortic Valve Implantation Death. Journal of the American Heart Association. 2023:e029542. doi:10.1161/JAHA.123.029542

Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood.

Schuermans A, Nakao T, Ruan Y, et al. Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood. Journal of the American Heart Association. 2023:e030220. doi:10.1161/JAHA.123.030220