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Publications

Structural and biochemical characterization establishes a detailed understanding of KEAP1-CUL3 complex assembly.

Adamson RJ, Payne C, Bartual SG, Mazitschek R, Bullock AN. Structural and biochemical characterization establishes a detailed understanding of KEAP1-CUL3 complex assembly. Free radical biology & medicine. 2023. doi:10.1016/j.freeradbiomed.2023.04.021

A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories.

Placido D, Yuan B, Hjaltelin JX, et al. A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories. Nature medicine. 2023. doi:10.1038/s41591-023-02332-5

Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing.

Calderón-Franco D, van Loosdrecht MCM, Abeel T, Weissbrodt DG. Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing. Antonie van Leeuwenhoek. 2023. doi:10.1007/s10482-023-01834-z

Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments.

Goel VY, Huseyin MK, Hansen AS. Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments. Nature genetics. 2023. doi:10.1038/s41588-023-01391-1

Single-cell RNA sequencing of liver fine-needle aspirates captures immune diversity in the blood and liver in chronic hepatitis B patients.

Genshaft AS, Subudhi S, Keo A, et al. Single-cell RNA sequencing of liver fine-needle aspirates captures immune diversity in the blood and liver in chronic hepatitis B patients. Hepatology (Baltimore, Md.). 2023. doi:10.1097/HEP.0000000000000438

Tryptophan metabolism determines outcome in tuberculous meningitis: a targeted metabolomic analysis.

Ardiansyah E, Avila-Pacheco J, Nhat LTH, et al. Tryptophan metabolism determines outcome in tuberculous meningitis: a targeted metabolomic analysis. eLife. 2023;12. doi:10.7554/eLife.85307

Bi-allelic variants in HMGCR cause an autosomal-recessive progressive limb-girdle muscular dystrophy.

Morales-Rosado JA, Schwab TL, Macklin-Mantia SK, et al. Bi-allelic variants in HMGCR cause an autosomal-recessive progressive limb-girdle muscular dystrophy. American journal of human genetics. 2023. doi:10.1016/j.ajhg.2023.04.006

Profiling of Natural Killer Interactions with Cancer Cells Using Mass Cytometry.

Hallisey M, Dennis J, Gabriel EP, et al. Profiling of Natural Killer Interactions with Cancer Cells Using Mass Cytometry. Laboratory investigation; a journal of technical methods and pathology. 2023:100174. doi:10.1016/j.labinv.2023.100174

Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk.

Kojima S, Koyama S, Ka M, et al. Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk. Nature genetics. 2023. doi:10.1038/s41588-023-01390-2

Comparative analysis of cell-cell communication at single-cell resolution.

Wilk AJ, Shalek AK, Holmes S, Blish CA. Comparative analysis of cell-cell communication at single-cell resolution. Nature biotechnology. 2023. doi:10.1038/s41587-023-01782-z