Serrano E, Chandrasekaran SN, Bunten D, et al. Reproducible image-based profiling with Pycytominer. Nature methods. 2025. doi:10.1038/s41592-025-02611-8
Imaging Platform
Riendeau JM, Gillette AA, Guzman EC, et al. Cellpose as a reliable method for single-cell segmentation of autofluorescence microscopy images. Scientific reports. 2025;15(1):5548. doi:10.1038/s41598-024-82639-6
Tegtmeyer M, Liyanage D, Han Y, et al. Combining phenomics with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion. Nature communications. 2025;16(1):6332. doi:10.1038/s41467-025-61547-x
Ramezani M, Weisbart E, Bauman J, et al. A genome-wide atlas of human cell morphology. Nature methods. 2025. doi:10.1038/s41592-024-02537-7
Ewald JD, Titterton KL, Bäuerle A, et al. Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.22.634152
Kalinin AA, Arevalo J, Serrano E, et al. A versatile information retrieval framework for evaluating profile strength and similarity. Nature communications. 2025;16(1):5181. doi:10.1038/s41467-025-60306-2
Siddiqui SM, Welch NL, Nguyen TG, et al. Bead-based approaches for increased sensitivity and multiplexing of CRISPR diagnostics. Nature biomedical engineering. 2025. doi:10.1038/s41551-025-01498-2
Chandrasekaran SN, Alix E, Arevalo J, et al. Morphological map of under- and overexpression of genes in human cells. Nature methods. 2025;22(8):1742-1752. doi:10.1038/s41592-025-02753-9
Rouquié D, Bender A, Cheah J, et al. The OASIS Consortium: Integrating Multi-Omics Technologies to Transform Chemical Safety Assessment. Toxicological sciences : an official journal of the Society of Toxicology. 2025. doi:10.1093/toxsci/kfaf128
Zulueta-Coarasa T, Jug F, Mathur A, et al. MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis. Nature methods. 2025. doi:10.1038/s41592-025-02835-8